Environmental Biology

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The development of an open space system for the Queensburgh municipal area.
(1994) Seppings, Kerry Ann.; Cooke, John Anthony.
This project was conducted with the view of extending the Durban Municipal Open Space System into surrounding municipalities. It was aimed at adopting a holistic approach to nature conservation by providing for the needs of the current human population whilst ensuring the long term survival of representative natural biota of the area. A preliminary study was conducted to: provide a basis for a more detailed vegetation survey; to assess the current public open space areas and to determine the land use history of the area. The vegetation was categorised into 14 community types and mapped to provide the basis for more detailed sampling. A survey of public open spaces revealed that most of the public parks were not providing for the needs of the local residents and that nature reserves and sports fields were more popular than conventional public parks. The land use history study revealed that the study area has been utilised for: cultivation; grazing; market gardening and more recently residential and industrial development purposes. A vegetation survey using phytosociological methods revealed that the vegetation in Queensburgh was dominated by alien invasive plant species although pockets of indigenous vegetation did occur. Drawing from the principles of reticular biogeography an open space system was designed using the information gained from the vegetation survey and preliminary study. The design included: 4 core areas where conservation was a priority; 3 corridors linking the core areas and a number of buffer areas. A general management plan was subsequently developed for the system. Management suggestions were concerned with: ecological; economical and sociological aspects. The open space system offers Queensburgh the opportunity to contribute to the national reconstruction and development program (RDP) by upgrading the current standard of living of the local residents without compromising the natural resources available to future generations.
Monitoring ground-level ozone and nitrogen dioxide in parts of KwaZulu-Natal and Mpumalanga (South Africa) by means of chemical and biological techniques.
(1998) Blair, Sharon Ann.; Cooke, John Anthony.
Surface ozone (O3) is one of the most toxic and abundant air pollutants. It has deleterious effects on human and animal respiration processes, and adversely affects plants. Four sites were selected for monitoring ambient O3 in the Durban metropolitan area: Botanic Gardens, University of Natal (UND), top of Kloof Gorge, and Mooi River. At each site tobacco Bel-W3 bioindicators, and NO2 and O3 passive diffusion tubes were placed. An O3 analyser (Dasibi 1108) was situated at the UND site. Monitoring was carried out for four weeks during summer, autumn and winter at each site, and during spring at the UND site. Two weeks of data from the diffusion tubes were collected during spring, from the Nelspruit area, Mpumalanga. Ozone concentrations measured with the Dasibi at the UND site were low in comparison to other urban-industrial areas in the world, with hourly values falling between 5ppb and 10 ppb. The highest hourly mean maximum recorded was 40ppb. A general spring/winter maximum and summer minimum was observed. This is typical of subtropical locations, where subsidence in prevailing anticyclonic circulation occurs. Diurnal characteristics included early morning minima and maxima at 12h00 in spring and summer, and maxima approximately two hours later in autumn and winter. This pattern was typical of that found in polluted environments, the magnitude, however, being lower. An unusual secondary nocturnal peak occurred during autumn, winter and spring. This could have been due to the long-range transport of relatively O3-rich air from a non-urban, high altitude inland area. Ozone concentrations were not strongly influenced by meteorological variables. Diffusion tube data indicated low O3, however, the coefficients of variation were high, implying a lack of precision in this technique. This technique would have to be improved before data obtained could be regarded as valid. Nitrogen dioxide, NO2, one of the precursors to O3, was monitored using diffusion tubes at the same sites. Concentrations were highest closer to the city centre, the highest concentration being 31ppb in autumn. In the Mpumalanga study, NO2 concentrations were higher in the city of Nelspruit than the surrounding areas. No significant differences were found in the O3 concentrations between the Mpumalanga sites. The tobacco plants showed the highest visible leaf injury in winter, corresponding with the higher Dasibi values, but there were no significant differences between the sites, and no significant differences in chlorophyll contents between the sites. In this study, O3-induced injury occurred below the previously established threshold of 40ppb.
Systematic revision of the golden mole genera : Amblysomus, Chlorotalpa and Calcochloris (Insectivora : Chrysochloromorpha ; Chrysochloridae)
(1995) Bronner, Gary N.; Meester, Jurgens Anthonie Jansen.; Rautenbach, Ignatius Lourens.; Cooke, John Anthony.; Willan, Kenneth Brian Ronald.
Patterns of variation in hyoid morphology, chromosomal properties and craniodental characteristics among ten chrysochlorid species from South Africa were studied to clarify generic relationships among taxa assigned variably to Amblysomus, Chlorotalpa and Calcochloris by previous authors. Intra-specific variation in hyoid morphology was negligible, but inter-specific differences were marked. Similarly, intra-specific karyotypic variation was negligible, except in A. hottentotus, which displayed three cytotypes. These data supported the recognition of Chlorotalpa, Calcochloris and Neamblysomus as taxa distinct from Amblysomus. Only one (presence/absence of M3) of the seven dental traits used by previous authors was consistent enough within species to be taxonomically useful in this work. Dental variability within species appeared to arise from the morphological differences between deciduous and permanent teeth, which may occur together in the same toothrow. Intra-specific craniometric variation in most species involved pronounced sexual size dimorphism, but negligible age-related variation. In the more widespread species, patterns of geographic variation were dominated by divergence in overall size, although subtle differences in cranial shape were also evident. Multivariate analyses confirmed the validity of subspecies in Chlorotalpa sclateri and Calcochloris obtusirostris, and showed that A. hottentotus (as traditionally recognized) includes: four cryptic species; five subspecies (including A. h. iris); and several populations that should be relegated to A. corriae. Inter-specific morphometric variation was dominated by overall size. The species fell into two size groups, and eight phena that differed mainly in skull width, palatal shape, rostrum breadth and claw size. Inter-specific relationships suggested by phenetic analyses of metric and mixed-mode data were, however, incongruent owing to discordance between different data suites. Evolutionary relationships inferred by integrating data suites, using either equal or differential weights, indicated that a strong phylogenetic signal was present in the data. Phylogenetic analyses showed that the differentially weighted treatment was more consilient with character-state distributions. A phylogram based on the differential-weights cladogram was used to derive a revised phylogenetic classification for the Chrysochloridae. Unlike previous treatments, this classification affords Carpitalpa and Neamblysomus generic rank, and assigns C. leucorhina from equatorial Africa to Calcochloris, rather than to Chlorotalpa.
The use of the toxicity identification and evaluation (TIE) protocol in the Port of Durban, South Africa.
(2011) Parsons, Gary Angus.; Vosloo, Andre.; Trotter, Dayle Carey.; Cooke, John Anthony.
The Port of Durban, with its close proximity to industrial, urban and agricultural activities, receives a number of chemical pollutants that settle out and accumulate in sediments. Chemical analysis of these sediments has indicated elevated levels of chemicals that, according to sediment quality guidelines, might cause adverse biological effects. However, elevated concentrations alone do not necessarily imply that chemicals are present in bioavailable concentrations high enough to be harmful to organisms that come into contact with them. Thus, chemical tests alone cannot provide an accurate indication of the potential adverse biological effects of these chemicals. In this regard, toxicity tests of sediment porewaters have been developed using sea urchin gametes to assist in determining the bioavailability of chemicals present in porewaters. Further, procedures such as Toxicity Identification and Evaluation (TIE), which involves the manipulation and/or treatment of toxic porewater, have also been developed to assist in the isolation and identification of chemicals causing porewater toxicity. In this research, on a number of sampling occasions between July 2007 and July 2009, three replicate sediment samples were extracted from a site in the Port of Durban known to contain sediment with potentially toxic porewater. Results of initial toxicity tests, using the sea urchin fertilisation test indicated the presence of toxic porewater although, in some instances, porewater toxicity was highly variable between replicate samples. However, results from TIE procedures performed to reduce potentially toxic concentrations of metals, ammonia and organic compounds did not resolve the primary cause of porewater toxicity. Further research indicated that chemicals including hydrogen sulphide, which can occur naturally in organically enriched sediments, may have been confounding factors that masked the potential toxicity of other chemicals present in the sediment samples. Consequently, a sampling strategy and modified TIE procedure have been recommended. The sampling strategy has been designed to assist with detecting and understanding any sample variability that may occur. The modified TIE procedure, which suggests initial procedures to determine and reduce/remove the possible confounding effects of potential naturally occurring compounds such as hydrogen sulphide from the porewater, could be used in future to understand and evaluate the quality of contaminated sediments from similar environments.

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Browsing Environmental Biology by Author "Cooke, John Anthony."