Browsing by Author "Derera, John."

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A study of bruchid resistance and its inheritance in Malawian dry bean germplasm.
(2007) Kananji, Geoffrey Acrey Duncan.; Melis, Robertus Johannes Maria.; Derera, John.; Laing, Mark Delmege.
Dry bean (Phaseolus vulgaris L.) is economically and nutritionally an important legume, not only in Malawi, but in many parts of Africa and Latin America. Unfortunately, two bruchid species (Acanthoscelides obtectus Say, and Zabrotes subfasciatus Boheman) are known to cause extensive damage in storage, reducing the economic importance, food value and planting value of the crop. The aim of this study was to: i) ascertain farmers’ perceptions of the importance of bruchids as storage pests, and to identify their preferred varietal traits in dry beans; ii) screen Malawian dry bean landraces for effective and adaptable sources of resistance to the two bruchid species; iii) determine the gene action and inheritance of bruchid resistance. Farmers’ perceptions on the importance of the two bruchid species to beans both in the field and in storage were established using a participatory rural appraisal (PRA) in three extension planning areas (EPAs) in Lilongwe agricultural development division (ADD). Results confirmed that the two bruchid species are important storage pests, causing serious storage losses among smallholder farmers. In the absence of any control measures, farmers indicated that more than 50% of their stored beans could be lost to bruchids. Indigenous bruchid control measures are not very effective, making it necessary to search for other control methods. It was also clear from the PRA results that breeders need to consider both agronomic and culinary traits in bean cultivar development. This would enhance uptake of newly developed varieties. To address the problem of bruchid damage experienced by smallholder farmers, a total of 135 dry bean genotypes, comprising 77 landraces and 58 improved varieties (obtained from collaborating partners) were tested under laboratory infestation (nochoice test methods) and field infestation (free-choice test methods). The objective of this study was to identify effective sources of resistance to the two bruchid species. Results of the study showed that there was a wide variation among the genotypes for resistance to the two bruchid species. Overall results showed that 88% of the genotypes ranged from susceptible to highly susceptible to Z. subfasciatus and only 12% of the genotypes were moderately resistant to resistant. Genotype screening for resistance to A. obtectus showed that only 12.5% were resistant, whereas 87.5% were moderately to highly susceptible. All of the improved genotypes were 100% susceptible to A. obtectus in storage. One landrace, KK35, consistently showed a high level of resistance to both bruchids under laboratory infestation, with results similar to the resistant checks (SMARC 2 and SMARC 4), while another landrace, KK90, displayed stable resistance under both laboratory and field infestation. However, performance of most genotypes was not consistent with field and laboratory screenings, suggesting that mechanisms of bruchid resistance in the field are different from that in the laboratory and field screening should always be used to validate laboratory screening. Resistance in the field was not influenced by morphological traits. The seed coat played a significant role in conferring resistance to both bruchid species in the laboratory, whereas arcelin did not play any significant role in conferring resistance in the landraces. The inheritance of resistance to A. obtectus was studied in a 6 x 6 complete diallel mating design, involving crosses of selected Malawian dry bean landraces. The F1 crosses, their reciprocals, and six parents were infested with seven F1 generation (1 to 3 d old) insects of A. obtectus in a laboratory, no-choice test. There were significant differences among genotypes for general combining ability (GCA) and specific combining ability (SCA). However, SCA accounted for 81% of the sum of squares for the crosses, indicating predominance of the non-additive gene action contributing to bruchid resistance. A chi-square test for a single gene model showed that 5 of the 13 F2 populations fitted the 1:2:1 segregation ratio of resistant, intermediate and susceptible classes, respectively indicating partial dominance. The eight F2 populations did not conform to the two gene model of 1:4:6:4:1 segregation ratio of resistant, moderately resistant, moderately susceptible, susceptible and highly susceptible classes, respectively. Average degree of dominance was in the partial dominance range in five F3 populations, but in general resistance was controlled by over-dominance gene action in the F2 populations. The additive-dominance model was adequate to explain the variation among genotypes indicating that epistatic effects were not important in controlling the bruchid resistance. The frequency distribution of the 13 F3 populations for resistance to A. obtectus provided evidence for transgressive segregation, suggesting that resistance is conditioned by more than one gene. Reciprocal differences were not significant in the F2 generation seed; but were significant in four crosses in the F3 generation seed for adult bruchid emergence, suggesting that maternal effects or cytoplasmic gene effects also played a role in the inheritance of resistance to the common bean weevil. Through this study, important sources of bruchid resistance in dry bean have been identified in Malawian landraces (KK35, KK90 and KK73). These resistant sources will be used in a breeding programme to develop bruchid resistant bean cultivars, as well as improve resistance in susceptible commercial bean cultivars currently grown by farmers in Malawi.
An analysis of the economic competitiveness of green maize production in smallholder irrigation schemes : a case of Makhathini flats irrigation scheme in KwaZulu-Natal, South Africa.
(2014) Chirigo, Kudakwashe Collen.; Mudhara, Maxwell.; Derera, John.
Recent assessments of smallholder irrigation schemes indicate that their success has been limited. Factors that contributed to their modest performance were poor infrastructure, limited knowledge of crop production among smallholders, lack of reliable markets and ineffective credit services. However, studies have not looked at the economic competitiveness of different crops grown under irrigation and efficiency in the allocation of farm resources. Different crops are grown in the irrigation schemes, but there is no economic criteria employed for analysing the economic competitiveness of the crops grown and on how choices are selected to maximise farmers’ profits. The aim of the study was to conduct an analysis of the household level characteristics on decisions to grow green maize and on the proportion of land allocated to it by smallholder farmers in Makhathini Flats irrigation scheme. A random sample of 150 farmers was drawn from a population of 314 irrigation farmers. The Heckman two-step regression model was used for assessing determinants of the decision to grow green maize. The results reveal that age, household size, plot size, extension and green maize gross margins significantly affect the decision to grow green maize, while gender, marital status, plot size, credit, gross margin of cabbages and green maize significantly affect the proportion of land allocated to green maize production. The study also sought to determine the economic competitiveness of green maize production as compared to alternative crops grown in the scheme using gross margin budget analysis and LP model. The gross margins analysis reveals that cabbage is the only crop with higher gross margins than green maize. The LP results also paint the same picture, indicating green maize competitiveness to other crops except cabbages. A factor contributing to the competitiveness of green maize is being an enterprise with low production costs compared to other enterprises. Farmers indicated that they lack capital to finance large pieces of land for crops with high production costs and the study concluded that availing credit to farmers could increase farm profits from enterprises with high production costs. Farmers indicated that they also produce for subsistence. This means that certain crops are not grown based on their economic viability, but rather on their contribution to household food security. More often than not, these goals are conflicting. The study recommends formulating a multi-criteria decision-making model that aims at allocating farm resources efficiently by optimising a set of important socio-economic objectives.
Assessment of maize germplasm lines for genetic diversity, cultivar superiority and combining ability.
(2012) Khoza, Suzan.; Derera, John.; Laing, Mark Delmege.
Maize (Zea mays L.) is an important crop in the world; however, its yield is compromised by new production challenges leading to poor yield in sub-Saharan Africa. This calls for a need to enhance maize adaptation to changing climate and challenging environments. The new maize varieties should be richly endowed with high frequency of genes that confer high yield under stress and non-stress conditions. Currently, such maize is not available, prompting research into development of new germplasm lines for use in developing new hybrids. The objective of the study was to determine i) the level of genetic diversity using SSR molecular markers and phenotypic data in a set of 60 maize inbreds from the breeding program, ii) genotype by environment interaction in maize hybrids, iii) cultivar superiority, iv) combining ability effects, v) the relationship between yield and secondary traits and vi) the relevant genetic parameters that underpin genetic gains in a breeding program. To study genetic diversity present in the germplasm, phenotypic data and 30 SSR markers were used to estimate the genetic distance between the inbreds. The results indicated that inbred lines which were put in the same cluster were related by pedigree and origin. To assess the level of genotype by environment interaction (GXE) and cultivar superiority of the new germplasm lines, hybrids were planted in five environments with two replications. Data were analysed using the REML and AMMI tools in GenStat 14th edition. The results revealed significant differences between hybrids and environments for grain yield. However, GXE interaction was also significant indicating possible challenges which can be encountered in selecting new hybrids. To determine combining ability estimates two different testers were used. The REML tool from GENSTAT was used to perform the line X tester analysis. Results indicated that both additive and non-additive gene action were important for grain yield. The direct selection strategy for yield was recommended because heritability of grain yield was high. Overall, results suggested that the information on genetic diversity will assist in defining heterotic groups; which will enable effective and efficient management of the germplasm lines to produce new maize hybrids.
Breeding gains diversity analysis and inheritance studies on soybean (Glycine max (L.) Merrill) germplasm in Zimbabwe.
(2013) Mushoriwa, Hapson.; Derera, John.; Tongoona, Pangirayi.
The soybean programme in Zimbabwe is over seventy years old. However, there is lack of information on breeding gains, genetic diversity, heritability, genetic advance, combining ability, gene action and relationships between grain yield and secondary traits available for breeding. Therefore, the aim of the present study was to characterise the genetic diversity of the available germplasm, determine gene action conditioning grain yield and estimate the breeding gains that have been realised since the inception of the breeding programme. Evaluation of 42 soybean genotypes for genetic diversity conducted during 2010/11 and 2011/12 cropping seasons, using phenotypic and molecular characterisation approaches, revealed evidence of wide diversity among the genotypes. The phenotypic traits and SSR markers assigned the soybean genotypes to 8 and 15 clusters respectively. The SSR marker technique was more polymorphic, informative and highly discriminatory. The clustering pattern and relatedness from SSR data was in agreement with the pedigree data while the phenotypic clustering was divorced from pedigree data. Genotypes, G41 and G7; G41 and G1; G41 and G42 were the most divergent; therefore, they could be utilized as source germplasm in cultivar development and commercial cultivars. Investigations on breeding gains involving 42 cultivars (representing a collection of all the varieties that were released in Zimbabwe from 1940 to 2013) showed that improvement in grain yield was slowing down. However, annual genetic gain was estimated to be 47 kg ha-1 year-1 representing an annual gain of 1.67%. Furthermore, grain yield ranged from 2785 to 5020 kg ha-1. Genotypes, G16, G15, G17, G1 and G42 exhibited superior performance in grain yield and other agronomic traits and are therefore, recommended for utilisation in the hybridisation programme. Seed protein concentration decreased by 0.02 year-1 while oil increased by 0.02, 100 seed weight increased by 0.21 g year-1 over time. In addition, number of days to 95% pod maturity and pod shattering increased by 0.35 and 0.38 days year-1 respectively while lodging declined by 0.31%. Results indicated that emphasis should be refocused on grain yield to restore the original linear increase. Assessment of the magnitude of GEI and stability of 42 released cultivars was done over 13 environments and two seasons using additive main effects and multiplicative interaction, cultivar superiority and rank analyses. Results showed that environment and GEI captured larger portion of the total sum of squares, which reveals the influence of the two factors on grain yield, hence, the need for evaluating soybean genotypes in multi-environment trials and over years. Further, the data revealed that GEI was of a crossover type because of differential yield ranking of genotypes. The three stability parameters selected two genotypes, G1 and G15, as the most productive, consistent and stable, thus they could be produced in diverse environments while G2, G4, G5, G7, G16, G40, G17, G18 and G31 were identified as unstable and suitable for specific adaptation. Correlation and path analyses showed that grain yield was positively and significantly correlated with number of branches per plant, number of nodes per plant, shelling percentage, and number of days from 95% pod maturity to first pod shattering, implying that breeding and selection for these traits probably improved grain yield. Number of nodes per plant, plant height and 100 seed weight exhibited highest direct effects on grain yield while, number of nodes per plant and plant height presented the highest indirect effects on grain yield. These results demonstrated that number of nodes per plant and plant height could be recommended as reliable selection traits for developing high yielding genotypes of soybean.
Breeding investigations for black Sigatoka resistance and associated traits in diploids, tetraploids and the triploid progenies of bananas in Uganda.
(2009) Barekye, Alex.; Tongoona, Pangirayi.; Laing, Mark Delmege.; Derera, John.
Reduced banana yield owing to black Sigatoka Mycosphaerella fijiensis Morelet is a threat to the livelihoods of Ugandan subsistence farmers who depend entirely on the banana crop for food security. The objectives of this investigation were to: (i) assess farmers’ knowledge of black Sigatoka disease in central Uganda; (ii) document the qualities farmers would desire in the banana genotypes to be developed for black Sigatoka resistance; (iii) appraise the methods for assessing black Sigatoka resistance in diploid banana populations; (iv) determine the phenotypic variation for black Sigatoka resistance and agronomic traits in diploid and tetraploid bananas; (v) determine the influence of tetraploid and diploid parents on the black Sigatoka resistance and agronomic traits in the triploid progenies; and (vi) evaluate 2x by 2x banana progenies for yield and black Sigatoka resistance. A survey that focused on low and medium banana production zones in Uganda established that there was limited awareness of black Sigatoka disease as a constraint on banana production in the areas surveyed. It was also established that farmers liked local bananas because of their superior taste, early maturity, and marketability. There were farmers who had been exposed to new black Sigatoka resistant materials but never liked these new banana materials because of poor taste and lack of market. Farmers desired new banana materials with good taste on cooking, heavy bunches, resistance to pests and diseases, drought tolerance, and early maturing capacity in that order. The results indicated that the banana farmers in Uganda attached more importance to food quality attributes than to production attributes especially when considering new banana materials. This suggested that farmers mainly grow bananas for consumption. Three black Sigatoka assessment methods, youngest leaf spotted, disease development time and area under disease progress curve (AUDPC) were appraised using a diploid population. All the three methods were able to classify the diploid accessions into resistant and susceptible clones. The cultivar rankings of AUDPC correlated strongly with the rankings of disease development time. The cultivar rankings of AUDPC correlated positively with the rankings of youngest leaf spotted method. The youngest leaf spotted at flowering and AUDPC predicted significantly total number of leaves at flowering (R2 = 0.53). Overall AUDPC had the highest coefficient of determination (R2=0.84) in assessment of banana diploids for black Sigatoka resistance indicating that it accounted for the highest variation in disease response observed among the diploid clones. From this investigation it was recommended that AUDPC should be used to assess resistance on black Sigatoka in Musa species. A phenotypic analysis on the diploid and synthetic tetraploids, and a molecular analysis using RAPD markers on the tetraploid population were conducted. Results indicated that the diploid population had significant (P<0.001) variation for plant height, plant girth, days from flowering to harvest, bunch weight, number of suckers, youngest leaf spotted, total leaves at flowering, area under disease progress curve, and number of functional leaves at harvest. Principal component analysis showed that plant height and girth explained most of the variation observed in the diploid population. In the tetraploid population, significant differences were observed for plant height, plant girth, and number of suckers (P<0.05). In the tetraploids principal component analysis, indicated that youngest leaf spotted and total leaves at flowering had higher loadings on principal component one. Genetic distances computed from RAPD markers indicated limited genetic variability in the tetraploid population. Another investigation was also carried out to determine the influence of tetraploid and diploid parents on black Sigatoka resistance and agronomic traits in the triploid progenies generated from tetraploid-diploid crosses. The results indicated that diploids transferred black Sigatoka resistance to triploid progenies as measured by disease development over time, the number of functional leaves at flowering and at harvest. On the other hand, the female synthetic tetraploids influenced plant height and bunch weight in the triploid progenies generated from tetraploid-diploid crosses as observed from triploid progeny correlations and parent-offspring regressions. Therefore, it is important to select tetraploids with heavy bunch weights to generate high yielding triploids in tetraploid-diploid crosses. Lastly, this thesis investigated the relationship between bunch weight and black Sigatoka resistance traits in 2x by 2x progenies generated using a random polycross design. Phenotypic correlations revealed strong positive relationships between bunch weight with total leaves at flowering, youngest leaf spotted, plant girth, and days from planting to flowering among the 2x by 2x progenies. Linear regression analysis indicated that girth, total fingers and finger length significantly predicted bunch weight (R2=0.67). However, days from planting to flowering, and total leaves at flowering had strong indirect effects on bunch weight via plant girth. The results imply that selection for parents with good combining ability for girth, finger length and total fingers can improve bunch weight in a diploid population.
Breeding investigations for developing durable resistance to maize lethal necrosis disease (MLND) and its causal viruses in Kenya.
(2021) Karanja, James Kamau.; Derera, John.; Gubba, Augustine.; Mugo, Stephen.; Wangai, Ann.
Maize is an important staple food in Kenya, grown in almost all agro-ecological zones, and accounts for about 40% of daily calories. The country produces an average of 3.51 million tons of maize grain (39 million x 90 kg-bags) which does not match the demand. The production is limited by emerging pests and diseases, such as fall army worm (FAW) and maize lethal necrosis (MLN) disease. The MLN disease is caused by synergisim between maize chlorotic mottle virus (MCMV) and sugar cane mosaic virus (SCMV). The FAW and MLN cause serious challenges for maize production due to the lack of suitable cultural control methods and tolerant maize germplasm. As a result, farmers and government agencies have challenged maize breeders to develop varieties that are resilient to climage change. This study focused on breeding investigations for developing durable resistance to maize lethal necrosis disease and its causal viruses in Kenya. The specific objectives were to 1) identify maize germplasm lines that are tolerant to MLN and its causative viruses (SCMV and MCMV) for use in making hybrid combinations; 2) to understand the genetic divergence and background of these genotypes to aid in developing high yielding and stable MLN resistant maize hybrids; and 3) to assess the impact of MLN, SCMV, and MCMV on maize production in Kenya. Experiments were conducted in Kenya during the 2015, 2016, 2017 and 2018 seasons in both screen house and open fields. Diallel crosses were used to characterize maize inbred lines, from CIMMYT, KALRO, and Ohio, for reactions to SCMV, MCMV and MLN disease. A set of selected and pre-commercial maize hybrids were used to assess MLN impact on maize production in Kenya. The study revealed that MLN is important for maize production, with high incidence and severity levels observed in all commercial maize varieties in Kenya. Disease severity, yield and its attributes significantly varied (P < 0.05) at V3, V7 and VT inoculation stages. The greatest effect was observed at V3 stage with increased number of rotten cobs observed at VT. Percentage yield loss was proportional to the percentage of disease incidence, severity and effect on yield attributes which varied from variety and season. This calls for the development and deployment of improved maize hybrids with MLN tolerance/resistance in the MLN-prone areas to enhance maize production. The study further identified eight inbred lines with low disease severity < 3.0 at 56dpi indicating their tolerance/resistane to SCMV, MCMV and MLN. The maize inbred lines MLN001 and MLN006, displayed high levels of resistance to MCMV, while MLN042 and MLN041 had the highest resistance to SCMV. Strong sources of MLN resistance, such as MLN013, MLN019, N211, and KS23-6, should be used in developing MLN-resistant hybrids. Inbred lines CML312, CML442, MLN013, N211 and MLN 019 are identified as good combiners for yield and earliness. The nature of gene effects was established as one including additive, and that genotype x location effects were significant for conditioning MLN resistance in maize hybrids. The presence and impact of SCMV and MCMV viruses in the field need to be investigated to aid in developing more robust MLN resistant varieties. MNL001, MLN013, MLN018, and MLN019 and their derived crosses need to be evaluated across maize agro-ecologies and seasons to understand MLN disease, the role of environment and the interaction of MCMV and Potyviruses.
Breeding investigations for development of specialty green maize hybrids.
(2011) Qwabe, Fikile Nozipho Pricilla.; Derera, John.; Tongoona, Pangirayi.
Green maize (Zea mays L.) provides food security and cash income to rural households in Sub-Saharan Africa (SSA). However, research on green maize varieties is scarcely reported in the literature. Consequently there is no information on suitable genetic materials (germplasm) for green maize production. Additionally there is no data regarding quality attributes of suitable hybrids, which impacts on variety development and management. Breeding investigations were therefore conducted to investigate farmers’ preferences for hybrids and attributes of green maize hybrids in KwaZulu-Natal, in South Africa, and to determine combining ability for green maize traits of experimental inbred lines that were derived from an experimental population. The study also investigated the relationships between green maize traits and some desired agronomic traits; and also sought to identify specific inbred combinations (hybrids) with potential for green maize production. A case study was conducted at Mjindi (MJD) and Ndumo (NDO) Irrigation Schemes in KwaZulu - Natal South Africa, to determine the attributes of the “ideal” hybrid, production constraints, production trends and enterprise viability. Prior to a formal survey some focus group discussions were conducted, then 64 green maize growers were interviewed using a formal questionnaire. The study indicated that the most desired consumer traits were a combination of sweet taste, long shelf life and large ears. The required attributes of the model hybrids were high grain yield potential, high selling ability, flint grain texture, white grain color, medium ear placement, thick and long ears, short maturity period, medium plant height, long shelf life and nonpopping during roasting. This study also showed that the enterprise was viable with average gross margin of about R10,000 per ha which makes it attractive to both small and large-scale commercial farmers with implications for rural development in the second economy. Thus there is a great business potential, but lack of suitable and special hybrids appears to be the major production constraint which should be addressed by research and development. A total of 100 advanced maize inbred lines were crossed in a line x tester mating scheme to generate 200 experimental hybrids. The hybrids with sufficient seed were evaluated for green maize and agronomic traits at three sites in KwaZulu-Natal. Large genotype x environment interaction effects were observed which was reflected by the different ranking of hybrids at each site resulting in selection of different sets of top 15 hybrids with potential for production in each environment. Only a few hybrids exhibited high performance consistently in at least two mega environments. The results showed that hybrids were highly significantly different for the green maize traits such as ear yield, ear length, single ear weight and marketability indices, and also for the agronomic traits. The difference among hybrids for marketing ability indices was attributed to the testers main effects and specific combining ability (SCA) effects. Differences between the general combining ability (GCA) of the lines and testers, and SCA effects were significant for the green maize traits. These findings suggested that the traits are governed by both additive and non-additive gene effects, respectively. Additionally observation of continuous and normal distribution of hybrids for the traits indicated that quantitative minor genes were involved and therefore the base population can be improved by selection for large ears, superior marketability index, and high single ear yield. The observed top performing hybrids were recommended for further testing at many sites. Results confirmed that the current dominant variety is not adapted to summer production conditions in the Mjindi and Ndumo areas which present opportunities for breeding programmes. Future studies should therefore aim to improve both the genetics and production economics of specialty green maize hybrids to further enhance profitability of the enterprise with positive implication for the rural economy in KwaZulu-Natal.
Breeding investigations for resistance to Phaeosphaeria Leaf Spot (PLS) and other important foliar diseases and a study of yield stability in African maize germplasm.
(2009) Sibiya, Julia.; Tongoona, Pangirayi.; Derera, John.
Maize (Zea mays L.) yields in the smallholder (SH) farming sector in Southern Africa have remained low. despite the availability of many improved varieties. Among the major constraints contributing to tow yields and threatening food security in the region are diseases which include grey leaf spot (GLS). common rust, northern corn leaf blight (NLB) and Phaeosphaeria leaf spot (PLS). These diseases are highly unpredictable in their occurrence every season, making them difficult to control. In addition, the majority of SH farmers cannot afford to control the diseases due to limited access to chemicals. Therefore, maize cultivars with high levels of disease resistance and tolerance to abiotic stresses would provide a long-term solution to addressing the problem of low yields, especially in the smallholder-farming sector. The objectives of this study were therefore to: i) establish farmers' perceptions on diseases, key limiting production constraints and preferred traits of maize cultivars. ii) screen germplasm adapted to tropical environments for resistance to PLS, iii) determine gene action for resistance to PLS and GLS, iv) estimate combining ability effects for resistance to PLS, GLS, NLB and common rust diseases, and v) determine grain yield stability of F, hybrids derived from crosses among selected tropical advanced maize inbred lines. These studies were conducted from 2006/7 to 2008/9 seasons at various sites in South Africa, Zimbabwe, Zambia and Uganda. Structured surveys and participatory rural appraisal (PRA) conducted in Obonjaneni. Busingatha and Okhombe villages of Amazizi district in the Northern Drakensberg established maize as the principal crop grown in the area. All the farmers who participated grew the local variety (landrace) they called Natal-8- row or Is/Zulu. The adoption of hybrids and improved open pollinated varieties (OPVs) was tow. Farmers preferred the local variety ahead of hybrids and improved OPVs mainly for its taste, tolerance to abiotic stresses and yield stability. Characteristics of maize varieties preferred by the farmers included: inexpensive seed, high yield, early maturity and tow input costs. Pests/d is eases and drought were not ranked highly, as farmers planted early to escape diseases and drought. Abiotic stresses were amongst the top four constraints faced by the farmers. The local varieties exhibited high yield potential and genetic variability fordisease resistance. Evaluation of maize germplasm adapted to tropical and subtropical environments of Africa for PLS resistance indicated significant (PS0.05) variation among the inbreds. populations and hybrids. In general, 63% of the inbreds/populations were resistant to PLS. Regionally important inbred lines; SC and N3 and CIMMYT's most successful lines such as CML395. CML444. CML202. CML312. and CML488 were resistant to PLS. Fifty- four percent of the single-cross experimental hybrids were also resistant to PLS. Correlation coefficients for area under disease progress curve (AUDPC) values for disease severity with PLS final disease severity scores were significant (P<0.001) and positive, implying that ranking of the genotypes for AUDPC and final PLS disease severity score was by and large similar. Forty five F, hybrids generated by crossing ten advanced maize inbred lines in a half diallel mating scheme were evaluated in two to six environments to determine combining ability, gene action and heterosis estimates for grain yield and resistance to PLS. GLS. NLB and common rust diseases. Highly significant (PS0.001) general combining ability (GCA) and specific combining ability (SCA) effects were observed for PLS. GLS. NLB. common rust, grain yield and other agronomic traits. The GCA effects were more important than SCA effects, indicating the predominance of additive over non-additive gene action for all the traits studied in these inbred lines. The inbred lines with good GCA for PLS resistance were: A12204, N3. A16. MP18 and CML488. and for GLS resistance were A1220-4. CZL00009. CZL00001. CML205 and CML443. Lines A16 and CML443 had good GCA for NLB and common rust resistance, lines A1220-4, N3, CML205, A16, and CML443 contributed towards high yield. Lines A1220-4 and A16 were late maturing, whereas CZL00009 displayed eariy maturity. High mid-parent and better-parent heterosis for high grain yield and resistance to all the diseases were observed. Generation mean analysis was used to deteimine the inheritance of PLS and GLS resistance in populations involving six tropical advanced maize inbred lines. Reciprocal crosses and backcross progenies were generated among inbreds A1220-4, A15, B17 (resistant. R), CML445 (moderately resistant. MR). CML441 and CZL00001 (susceptible. S) for PLS inheritance, and among inbreds A1220-4. A15, CML441 (resistant. R). and N3 and B17 (susceptible. S), for GLS inheritance. Results indicated highly significant additive effects (P<0.001) for PLS and GLS resistance, with dominance effects accounting forSH%of the variation in all the crosses for PLS and only A15 x B17 cross for GLS. Epistasis and cytoplasmic gene effects in favour of PLS resistance in F, crosses when the more susceptible parent was used as female were significant. For GLS resistance, epistasis was observed only in CML441 x N3 and A1220-4 x B17 crosses, while no cytoplasmic gene effects were detected. Resistance for PLS was medium to highly heritable and conditioned by less than four genes which exhibited incomplete dominance. In general resistance to GLS was controlled by two to three genes exhibiting zero to partial dominance and was moderate to highly heritable. Stability analysis of the hybrids was done over 11 environments using the additive main effects and multiplicative interaction (AMMI) and the genotype and genotype by environment (GGE) biplot analyses. Both AMMI and GGE biplot analyses selected hybrids H21 (CZL00009 x A16). H14 (A1220-4 x A16). S63 (SeedCo hybrid check). N72 (MP72/N3) and H26 (CZL00001 x A16) as stable and high yielding. Hybrids H1 (CML445 x A1220-4), H44 (CZL00009 x CML443) and H18 (CZL00009 x CZL00001) were identified by both methods as unstable but high yielding. AMMI and GGE biplot analyses identified ZAM08, C108, RAO9 and C09 as the most representative environments which were high yielding and relatively stable. In general, the study has revealed that based on the farmers ranking of the constraints in their area, breeding opportunities do exist for incorporating tolerance to both biotic and abiotic stresses in their varieties. It also identified maize lines resistant to the main foliar diseases, with good combining ability and heterosis for resistance and high grain yield. Hybrids with wide adaptation and high yields across environments were also observed. The experimental hybrids that exhibited high levels of resistance can be recommended for further testing and release. On the whole, highly significant additive effects and moderate to high heritability estimates observed for all the diseases and grain yield implied progress would be made through selection, although significant epistasis and dominance could slow progress. Dominance effects towards resistance and high yield could be exploited in developing single cross maize hybrids among these inbreds when only one parent is resistant.
Breeding investigations for resistance to Phaeosphaeria Leaf Spot (PLS) and other important foliar diseases and a study of yield stability in African maize germplasm.
(2009) Sibiya, Julia.; Tongoona, Pangirayi.; Derera, John.
Abstract not available.
Breeding investigations for salt tolerance in rice incorporating characterisation of salt affected soils and farmers perceptions and preferences for tolerant cultivars in north-eastern Tanzania.
(2010) Kashenge-Killenga, Sophia.; Tongoona, Pangirayi.; Derera, John.
Rice (Oryza sativa L.) is the principal crop of North Eastern Tanzania but production is threatened by salt affected soils, drought and the use of un-adapted cultivars, among other constraints. Little research and hardly any breeding have been done on the aspects of salt tolerance of the crop in sub Saharan Africa, leading to low yields and low production in rice irrigation schemes under arid and semi arid conditions. A project was therefore implemented in North Eastern Tanzania during 2007-2010 seasons to investigate the possible breeding contributions to enhance productivity and production of the crop in salt affected areas. The objective of this study was to: a) determine farmers’ perceptions on both salt problems and their effects on rice crop productivity as well as establishing farmers’ needs and preferences for rice varieties in the targeted irrigated environment; b) determine the extent of salt problem in both soil and irrigation water in the available rice irrigation schemes in the North-eastern Tanzania; c) identify the major physiological mechanisms associated with salt tolerance in farmer-preferred native varieties and landraces; and d) determine the mode of inheritance of salt tolerance in rice. Participatory rural appraisal was conducted in Mkomazi and Mombo villages in Tanga region with the aim of understanding characteristics of rice–based farm economy, farmers’ perception of agriculture constraints and variety preferences in salt affected areas of North-eastern Tanzania. This was followed by a preliminary study to understand soil characteristics in relation to salt problems and its extent in selected nine rice irrigation schemes. Studies was established under controlled conditions to assess the salt tolerance of some rice farmers preferred rice cultivar and evaluate the putative traits in the rice materials that contribute to the performance of a genotype under saline and saline-sodic condition. Thereafter, genetic mechanism governing various morpho-physiological parameters in selected Tanzania local farmers’ preferred varieties and salt tolerant donors under saline and sodic soil conditions of North Eastern Tanzania were determined. A participatory rural appraisal (PRA) established that rice was a major staple food and cash crop and rice farming was a major economic activity in the area. However, soil degradation through increased salt affected soils was identified as the major factor responsible for irrigated rice yield decline. Major varieties grown are salt sensitive, and salt tolerant varieties were not available. The study also revealed that most farmers’ preferred traits of rice cultivars were high yield potential, aroma, early maturing, medium plant stature, tolerance to salt and drought. Improvement of these characters in new salt tolerant varieties would increase food production in fields with low or zero productivity and the well-being of the poor farmers. A soil characterisation study indicated the magnitude of the problem, whereby, seven out of nine studied irrigation schemes were affected and sodic and saline-sodic conditions were the dominant types of soils. Poor irrigation canals and management of irrigation water were the driving factors that contributed to salts accumulation causing a decline in productivity. Experiments were established under controlled environments to evaluate the tolerance of 10 and 11 rice genotypes under saline and saline-sodic stresses, respectively. Significant variation between genotype and significant interactions between genotype and salt treatment (P<0.001) were observed for all characters studied. Genotype Pokkalli, IR 67076-2B-21-2 and IR 56 showed superior performance under saline, whereas CSR 27, Nerica 2 and IR 56 had superior performance under saline-sodic. The study therefore established that, all the local farmer preferred cultivars except IR 56 performed poorly under both salt stress environments. High seedling vigour, less leaf injury, less Na+ and high K+ accumulation in leaves, low Na+/K+ ratio of ion uptake, high spikelet fertility, increased grains per panicle and 1000 grain weight were considered as the desirable characteristics therefore can be used in developing lines for salt tolerance for production under saline and saline - sodic conditions. Gene action and combining ability studies for nine morpho-physiological traits were studied under normal, saline and sodic soil environments. The rice populations were generated through 7 x 7 full diallel crosses and advanced to F2. The parents comprised two donors for saline tolerance, one donor for sodic tolerance and four salt sensitive farmers preferred varieties. Both additive and non-additive gene effects were important in the inheritance of the characters studied in all soil environments. However, additive effects were more important for the number of tillers, shoot Na+, Na+/K+ ratio and plant height. Both additive and non-additive gene effects were important for spikelet fertility, days to 50% flowering, number of grains per panicle, 1000 grain weight, and grain yield; however the magnitude of additive gene effect was higher than non additive effects. Amongst the parental lines, the best general combiners for yield along with other traits were TXD 306 and IR 67076-2B-21-2 under normal non-saline/sodic condition; IR 56, Pokalli and TXD 306 under saline condition and CSR 27 and TXD 306 under sodic conditions. The overall results from this study indicated the possibility of improving both yield and salt tolerance from this set of germplasm; therefore contributing to increasing rice yields in the marginal salt affected environments.
Breeding investigations of finger millet characteristics including blast disease and striga resistance in Western Kenya.
(2008) Oduori, Chrispus O. A.; Derera, John.; Tongoona, Pangirayi.
Finger millet (Eleusine coracana (L.) Gaertn. ssp. coracana) is an important food, food security and cash crop in eastern and southern Africa where small-scale farmers grow it in low input farming systems. The crop has food security, nutritional, cultural, medicinal, and economic value with high industrial potential. Little research and hardly any breeding have been done on the crop leading to low yields and low production. A project was therefore implemented in western Kenya during 2004-2007 seasons to investigate the possible breeding contributions to enhance productivity and production of the crop. The research comprised a social survey, germplasm evaluation, appraisal of ethrel as a chemical hybridising agent (CHA), genetic analysis of yield, and resistance to blast and Striga, and breeding progress in developing new finger millet varieties. A participatory rural appraisal (PRA) was conducted in three districts during 2006 to position finger millet (FM) in the farming systems, production constraints, and variety diversity and farmer preferences. The PRA established the high rating the peasant farmers gave to finger millet among crop enterprises, using it for food, cash, brewing, ceremonies and medicinal purposes. Farmers cultivated many varieties ranging from five to nine in a district, but each district had its own popular variety. Farmers used the following criteria to select new cultivars: high yield potential; early maturity; resistance to blast disease, Striga, birds, drought, and lodging; large head size, dark grain colour, and good taste. This probably indicated the willingness of farmers to adopt new varieties. Farmers identified constraints to production as blast disease, Striga, wild FM, birds, rats, termites, lack of market, labour shortage, and low yield. The farmers’ variety selection criteria and production constraints underscored the need to improve finger millet varieties. Evaluation of 310 accessions for trait variability and association conducted during 2005 long rain (LR) season at two sites revealed wide variation among the accessions for yield and secondary traits. The best accessions grain yield was above the yield potential of 5,000- 6,000kg ha-1 reported in other environments. Accessions KNE 072 (7,833kg ha-1), GBK 028463 (7,085kg ha-1), GBK 029661 (6,666kg ha-1) and FMBT ACC#42 (6,566kg ha-1) were outstanding. The data showed the opportunity to select for yield directly because of its wide variability but indirect selection could also be used to exploit seedling vigour as shown by its high correlation to yield and direct and indirect positive effects on yield through plant height and single plant yield in path analysis. The wide genetic variability among the genotypes for several traits indicated high potential to breed new and better finger millet varieties.
Breeding investigations on utility of maize streak virus resistant germplasm for hybrid development in the tropics.
(2014) Gichuru, Lilian Njeri.; Derera, John.; Tongoona, Pangirayi.
Maize (Zea mays L.) supports millions of livelihoods in sub-Saharan Africa (SSA) in terms of food and feed. Production of the crop is however limited by several factors, among these, maize streak virus (MSV) disease. Although extensively studied, MSV remains a serious problem in SSA due to several challenges in breeding MSV resistant maize varieties. These include integration of MSV resistant germplasm from different backgrounds, reliance on a few resistant sources, and genotype x environment interactions. This study was designed to assess the breeding potential of several MSV resistant lines in hybrid combinations. Understanding architecture of genetic divergence and background of these genotypes would greatly aid in breeding high yielding and stable MSV resistant hybrids. Experiments were conducted during 2010 to 2012 seasons in Kenya. Diallel crosses and SSR markers were used to characterize MSV resistant maize inbred lines from three programs of CIMMYT, KARI and IITA. In general, this study revealed that MSV is still an important problem in Kenya with high incidence and severity levels in the farmers’ fields. The levels of MSV resistance in locally grown hybrids needs to be improved. Farmers challenged breeders to develop new hybrids that combine early maturing, high yield potential and MSV resistance. The study was successful in identifying the best eight inbred lines for use in breeding new maize hybrids with MSV resistance. The nature of gene effects was established for the first time, in particular the role of epistasis and G x E in conditioning MSV resistance in hybrids. Results indicate serious implications for previous models that ignored epistasis in studying MSV resistance in maize. The inbreds Z419, S558, CML509 and Osu23i, displayed high levels of epistasis for MSV resistance. Unless strong sources of MSV resistance, such as MUL114 and CML509, are used, breeding resistant hybrids will require parents that carry dominant resistance genes. The additive-dominance model was adequate to explain northern leaf blight (NLB) resistance in hybrids, indicating fewer complications in breeding NLB resistant hybrids. The study also reveals that SSR genetic distance data can be used to predict hybrid performance, especially when the correct set of markers is used. Many previous studies have not found any significant relationship between genetic distance and heterosis, due to large G x E and use of a wrong set of markers. The diallel analysis and SSR data established the important heterotic groups, which will be exploited for efficient development of MSV resistant maize hybrids. These strategies will be recommended to programs that emphasize MSV resistance in maize hybrids.
Characterization and genetic analysis of maize germplasm for resistance to northern corn leaf blight disease in Tanzania.
(2012) Bucheyeki, Tulole Lugendo.; Derera, John.; Tongoona, Pangirayi.
The majority of farmers in Tanzania have not yet adopted modern maize varieties and still cultivate landraces and open pollinated varieties (OPVs) with low production potential and susceptible to diseases like maize streak virus (MSV), grey leaf spot (GLS) and northern corn leaf blight (NLB). The NLB disease is among the major causes of low yield and has been reported in all 21 maize growing regions in Tanzania. Breeding for host plant resistance with high yielding potential and involving the community in the breeding process is expected to address the problem of low yield, NLB disease susceptibility and low rate of F1 hybrid adoption. Therefore, the study was conducted to obtain additional sources of resistance to NLB disease, high yielding cultivars with community acceptable traits adapted to Tanzanian conditions. The main objective was to contribute to increased maize productivity in the western zone of Tanzania. The specific objectives of this study were therefore to : 1) investigate maize production limiting factors for smallholder farmers in western Tanzania, 2) identify farmers and stockist perceptions, opinions and maize variety selection criteria in western Tanzania, 3) establish NLB disease status in farmers’ fields of western Tanzania, 4) determine the genetic relationships among landraces and assess maize landraces as sources of breeding materials, 5) determine the combining ability and heterosis for NLB disease resistance of eleven maize inbred lines adapted to Tanzanian conditions, and 6) determine the gene action and inheritance of resistance to NLB disease in five maize inbred lines adapted to Tanzanian conditions. The study was conducted from 2008-2011 in three diverse environments which represent all the maize growing regions in the country The participatory rural appraisal (PRA) was conducted in three districts to investigate farmers’ and stockists preferred traits for maize selection in western Tanzania, determine maize production constraints facing farmers and assess NLB disease prevalence in the same area. A focus group of 30 farmers was selected in each of the three villages. Transect walks, wealth ranking and historical profiles were used in an informal survey. One hundred and fifty questionnaires were used in a formal survey. The recorded yield was only 1 t haˉ¹. Thirteen major maize production constraints, 13 insect pests and vermin and, 11 diseases were recorded. The NLB disease was reported to be increasing in severity in all farmers’ fields. Farmers’ preferred traits included resistance to abiotic and biotic stresses, early maturity, preferred milling qualities, high storage qualities and high yielding potential. Stockists mentioned 12 preferred maize variety traits which included high yielding, disease and insect pest resistance, heavy grain, large cob size and large grain sizes. Similarity between farmers and stockist variety preference ranking were found to exist. The occurrence and distribution of northern leaf blight (NLB) disease study was conducted to assess the incidence and severity of NLB disease in farmers’ fields in seven districts. The study was conducted for two seasons. In each season, 175 fields with 5600 plants were sampled. There were sixteen varieties grown with wide NLB disease reaction variation. Gembe, a landrace, was among the three observed resistant varieties. The NLB disease has changed its distribution pattern affecting all districts of the western zone. The disease incidence in season two (2009/2010) significantly increased from season one (2008/2009) t= -3.25 (348), P= 0.001. About 30% of both means of blight incidence and severity were recorded in the area. Characterization and screening of maize landraces for northern leaf blight disease resistance was conducted to determine the genetic relationships among landraces, assess maize landraces as sources of NLB disease resistance and assess important agronomic traits for future maize improvement. Ninety breeding materials consisting of 71 landraces and 19 commercial varieties were evaluated. The average yield of landraces under research management was 2.3 t haˉ¹. Landrace TZA 3075 was identified as NLB disease resistant. Yield potential, dent grain texture, white endosperm and husk cover were important agronomic traits observed among landraces. There were high variations in terms of morphology and NLB disease resistance among the landraces. Five principal components contributed to 71.98 % of total variation. Clusters analysis revealed five distinct groups of landraces. Leaves/plant, infested leaves/plant, lesion number, lesion length, lesion width and NLB disease incidence traits highly contributed to variation and grouping of landraces. Combining ability analysis for northern leaf blight disease resistance was conducted to estimate the combining ability for NLB disease resistance of 11 maize inbred lines adapted to Tanzanian conditions, determine maternal effects which are involved in NLB disease resistance in maize germplasm, and determine the heterosis in the F1 hybrids. A full 11 x 11 diallel cross was performed. All top ten experimental hybrids in each of the three sites had negative midparent heterosis for NLB disease severity. The overall mid-parent heterosis means for yield across sites was 152%. The mean sum of squares for GCA was highly significant (P< 0.001) on disease severity indicating additive gene action effects. Mean sum of squares for SCA were highly significant for disease severity and yield implying non-additive gene action effects. The mean squares for reciprocal effects were highly significant on yield and non-maternal sum of squares had significant effect (P<0.05) on yield. The GCA contribution was high for disease severity (91%) and lesion number (85%). Almost, all GCA effects for NLB disease resistance were negative implying contribution to disease resistance. Due to preponderance of the additive gene action, recurrent selection could be used to improve the resistance of inbred lines while the non-additive gene action could be exploited in breeding for disease resistant hybrids. Generation mean analysis of northern leaf blight disease resistance was conducted to determine the mode of gene action involved in the inheritance of resistance to NLB disease in five inbred lines adapted to Tanzania at contrasting environments, estimate heterosis and heritability in five tropical inbred lines. Generation mean analysis was conducted using a six parameter model comprising P1, P2, F1, F2, BCP1 and BCP2 generation progenies. The mean sum of squares for environment, replication with the nested environment, generations, generations x environment interactions were highly significant (P<0.001). The full model of additive, dominance, additive x additive and additive x dominance epistatic effects was highly significant (P<0.001). Nonetheless, the additive gene effects were predominant ranging between 57% and 89% which was matched by large heritability (54%-85%). The average degree of dominance ranged between -0.52 and 0.88 supporting observations of partial dominance. The NLB disease severity showed a continuous distribution in all three sets for F2, BCP1 and BCP2 populations which is an indication of quantitative nature of inheritance and additive gene effects. The mid parent heterosis ranged from -19 to 1%. Therefore, resistance to NLB disease could be improved through selection by exploiting the additive gene effects. The epistatic gene effects would cause less complications because they were negligible (<25%). The client oriented breeding for maize northern leaf blight disease resistance was carried out to perform farmers and stockists assessment on the 110 F1 experimental maize hybrids and compare them with breeders selection criteria. Breeders selection criteria ranked 10 top high yielding experimental hybrids. Farmers developed 14 while stockists developed 13 selection criteria. The most preferred hybrids by farmers were VL 05616 x CML 159, CML 159 x KS03- 0B15-47 and EB04-0A01-304 x CML 442 while stockists preferred VL 05616 x CML 395, EB04-0A01-304 x CML 442 and VL 05616 x CML 159. Two F1 experimental hybrids EB04- 0A01-304 x CML 442 and CML 159 x CML 442 appeared in all top five ranked hybrids by breeders, farmers and stockists. Generally, findings showed that, farmers, stockists and breeders coincide in some selection criteria but also differ in other cases.
Characterization of sorghum [Sorghum bicolor (l.) Moench] parental lines and prediction of their hybrid performance under simulated water and population density stress.
(2006) Karari, Clement Kamau.; Tongoona, Pangirayi.; Derera, John.; Laing, Mark Delmege.
Sorghum breeders have not made much yield improvement in new sorghum varieties in Kenya since Serena in was released in the late 1960s. KARI Mtama-1 which was released in 1993 has no yield advantage over Serena. A yield plateau for sorghum in Kenya is apparent. A new breeding approach was adopted to break that yield barrier. Development of hybrid sorghum was proposed and is expected to break the yield barrier and also deliver cultivars that meet farmers' main requirements. The objectives of the study were to (1) identify farmers' requirements in sorghum cultivars, constraints to sorghum production and why improved cultivars from research are not being adopted, (2) characterize male and female parents and establish if genetic distance could identify superior parent populations for hybrid production (3) estimate genetic variance components and determine the possibility of using GCA and SCA estimates in choosing parents for use in hybrid production, (4) test hybrids and open pollinated variety (OPV) parental lines for stress tolerance and identify tolerant hybrids for further testing and, (5) compare single cross hybrids and OPV varieties in yield performance. Participatory rural appraisal in Kitengei and Nzambani areas of Kambu showed that sorghum was especially important in semi-arid parts of Kenya. Food, trade, feed, nursing food and thatching were the most important uses of sorghum. High grain and stover yield, large grain size, early maturity, drought tolerance, pest and disease resistance, coloured grain and intermediate plant height were the major requirements of farmers. Fifty-three pollinators and forty-one male sterile parents were introduced from four sources and screened together with 27 pollen parents from Kenya. Parents and hybrids were tested in 4 environments: high and low plant density, in high and low moisture regimes laid out in a triple square lattice design in Kenya, with parents having two additional tests in South Africa. Males, females, sexes and parental sources differed significantly in head weight. There were sex x country and sex x environment interactions for head weight. Genetically distant parents' populations had higher chances of superior heterosis. Parents showed significant additive genetic variance in head weight. The regression of non-additive to additive genetic variance was roughly one and significant. Three female and five male parents were suitable for production of hybrids adapted to multiple environments. Hybrids and OPV lines significantly varied in head weight. Hybrids were superior to OPV lines in most agronomic traits. Economic superiority of the hybrids was sufficient to cover cost of hybrid production and distribution in Kenya. Hybrids and OPV lines varied significantly for plant density stress. Hybrids were less sensitive to stress and more productive than OPV lines under population density stress. KARI varieties were sensitive to plant density stress. In general low sensitivity to stress was beneficial and hybrids had superior yield to inbred varieties.
Combining ability analysis of maize inbred lines and genotype x environment interaction of hybrids for grain yield and maize streak virus resistance.
(2018) Juma, Sheila Natividade.; Derera, John.; Sibiya, Julia.
Abstract available in PDF file.
Combining ability and heterosis for stem sugar traits and grain yield components in dual-purpose sorghum (Sorghum bicolor L. Moench) germplasm.
(2009) Makanda, Itai.; Tongoona, Pangirayi.; Derera, John.
Sorghum is the fifth most important cereal crop in the world and ranks third in Africa, and it is potentially the number one cereal for the semi-arid environments in sub-Saharan Africa. Sorghum varieties have been developed specifically for grain, fodder or stem sugar but not for dual-purpose combining grain and stem sugar. Such varieties could be beneficial to the resource-poor farmers by providing grain for food and sugar rich stalks that can be sold for bioethanol production. However, there are no suitable dual-purpose cultivars on the market. There is also limited information about the combining ability, gene action and genetic effects and relationships between stem sugar and grain yield which is required in devising appropriate strategies for developing dual-purpose sorghum varieties. Furthermore, there is also lack of information about the perceptions of resource-poor, small-scale farmers and other important stakeholders on the potential of dual-purpose sorghum production and the value chain. Therefore, the objectives of this study were to: (i) investigate the awareness of the farmers, industry and other stakeholders on the dual-purpose sorghum varietal development and its feasibility, (ii) screen germplasm for use as source materials useful for grain yield and stem sugar traits, (iii) investigate the inheritance and heterosis levels attainable in grain yield components and stem sugar traits in dual-purpose sorghums, (iv) determine the relationships between stem sugar traits and grain yield components in dual-purpose sorghums, and (v) investigate the fertility restoration capacities of selected male-fertile lines used as male parents through the evaluating seed set in experimental dual-purpose hybrids. Two surveys were conducted to establish stakeholders’ level of awareness and perceptions on the potential and feasibility of developing and utilising dual-purpose sorghums in Southern Africa. One survey was carried out in the semi-arid tropical lowlands in Zimbabwe under the conditions of small-scale and resource-poor farmers while the other, which targeted sugar industries, plant breeders, engineers, political leaders, economists and extension workers, was conducted in South Africa and Zimbabwe. Data were analysed using SPSS computer package. Results showed that both farmers and the non-farmer stakeholders were in agreement on the view that dual-purpose sorghum would be a viable enterprise that could alleviate poverty, enhance food security, create rural employment and boost rural development in southern African countries. Farmers were willing to adopt the cultivars if they were made available. The stakeholders also suggested mechanisms to overcome the infrastructural, economic and technical challenges associated with the technology. Screening of regional and international germplasm collection held at the University of KwaZulu- Natal in South Africa revealed high genetic variability for grain yield, stem brix and stem biomass yield that can be exploited in dual-purpose sorghum cultivar development. Ten lines were selected for inclusion as parents in the dual-purpose sorghum breeding programme. The selections were crossed to eight cytoplasmic male-sterile lines originating from the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) in accordance with a North Carolina Design II mating scheme. The 18 parents, together with the 80 experimental hybrids generated and two check varieties were evaluated for grain yield and stem sugar traits in six tropical low- and mid-altitude environments in Mozambique, South Africa and Zimbabwe. Stem sugar concentration and stem biomass were measured at the hard dough stage of each entry due to maturity differences between the genotypes. Grain yield was measured and adjusted to 12.5% moisture content. Data were analysed in GenStat computer package following a fixed effects model. Both additive and non-additive gene effects were important in controlling stem brix, stem biomass, grain yield and the associated traits in dual-purpose sorghum. This showed that breeding progress can be achieved through hybridisation and selection. Cultivars showing high stability, and high standard and better-parent heterosis for the three traits were identified implying that breeding for general adaptation was an option and that productivity could be enhanced by breeding hybrid cultivars. The relationships between traits were estimated using correlation and path-coefficients analysis. Grain yield was found to be negatively and significantly associated with stem brix but was positively and significantly associated with stem biomass. This implied that breeding for high stem brix might compromise grain yield but selection for high stem biomass improved grain yield. Stem biomass and stem brix were not significantly correlated. The general negative relationship between grain and stem brix was attributed to the predominance of entries with contrasting performances for the two traits. However, the relationship between grain yield and stem brix of the top 20 performing entries showed a non-significant relationship between stem brix and grain yield suggesting that the traits were independent of each other. This finding was confirmed by the presence of crosses that combined high performance for both stem brix and grain yield as well as stem biomass among the hybrids. The relationships between stem brix and stem biomass for the top 20 performers remained non-significant while that between stem biomass and grain yield became stronger, positive and significant. Direct selection for stem brix and grain yield was shown to be more important than indirect selection, while selection for stem biomass improves grain yield but had no effect on stem brix. Therefore, it is possible to breed dualpurpose sorghum cultivars and the identification of genotypes combining the desirable traits is prudent in addition to general relationships information. The study on fertility restoration capacities as evaluated through hybrid seed set showed that fertility restoration was under the control of genes with both additive and non-additive action. Since restoration is conferred by a single dominant gene (Rf1), this could have arisen from the action of the modifier genes that have been previously reported to influence it. This showed that fertility restoration can be improved through breeding. Hybrid combinations showing complete seed set and high performance for grain, stem brix and stem biomass were identified and are potential dual-purpose sorghum cultivars. Overall, the study showed that development of dualpurpose sorghum cultivars would be feasible and genotypes identified as potential cultivars in this study will be forwarded for further testing across many sites and seasons in the target environments.
Combining ability, genetic gains and path coefficient analyses of maize hybrids developed from maize streak virus and downey mildew resistant recombinant inbred lines.
(2015) Mathew, Isack.; Derera, John.
Farmers in SSA continue to obtain low yields (less than two tonnes per hectare) despite the high potential yield (about 14 tonnes per hectare) that can be achieved. The development of improved and high yielding hybrids can help to reduce this gap significantly. Characterisation of maize inbred lines is crucial for developing high yielding maize hybrids. A line x tester analysis involving 38 crosses generated by crossing 19 maize inbred lines with two tropical testers was conducted for different agronomic traits. The maize inbred lines used in this study were sampled from a bi-parental inbred population developed by a shuttle breeding program at University of KwaZulu Natal. The objectives of the study were to estimate combining ability of inbred lines and hybrids, to evaluate the performance of the hybrids in agronomic traits and grain yield, to calculate breeding gains achieved through selection and to deduce the relationship between secondary traits and grain yield. In total 50 hybrids, including control hybrids were evaluated in the trial. The hybrids were planted in the summer season of 2014/15 under rainfed conditions at three sites, Cedara, Dundee and Ukulinga in five metre row plots and replicated twice in 5X10 alpha lattice design under recommended agronomic practices for maize. Data was collected using a CIMMYT protocol and subjected to statistical analyses using ANOVA and REML packages in GENSTAT 14th edition and PATHSAS macros in SAS 9.3 computer software. The results showed varying performances between the lines, crosses and control hybrids at the different sites. Inbred lines DMSR-8, DMSR-13, DMSR-30 and DMSR-35-5 were shown to have good combining ability while DMSR-21 and DMSR-73 showed positive specific combining ability. Selection across sites improved grain yield by 9.32% over the population mean and by 10.22% and 12.73% at Cedara and Dundee, respectively over commercial hybrids. Ranking by mean yield identified hybrids 15XH16, 15XH20 and 15XH28 at Cedara, Dundee and Ukulinga respectively, as the highest yielding hybrids for that particular environment. GGE biplot and AMMI analyses revealed that hybrids 15XH10, 15XH13, 15XH20, 15XH25, 15XH28, 15XH34 and 15XH39 were the most stable hybrids. Secondary traits were found to be associated with grain yield potential of hybrids. Ear prolificacy had the most important relationship with grain yield and was recommended for selection in grain yield improvement programs.
Combining Chilo partellus Swinhoe and Sitophilus zeamais Motschulsky insect pest resistance in early maturing maize hybrids.
(2016) Tende, Regina Mumbua.; Derera, John.; Mugo, Stephen.
Abstract available in PDF file.
A comparative analysis of conventional and marker assisted selection methods in screening for resistance to maize (Zea mays L.) streak virus disease.
(2006) Abalo, Grace.; Tongoona, Pangirayi.; Derera, John.
Maize (Zea mays L.) streak virus disease (MSD) is the most important virus disease in Africa but farmers are unaware of its status. A project was initiated to assess the current status of MSD and to breed for its resistance. Four populations comprised of two BC1F1 and two F2 progenies developed by backcrossing and selfing the F1 progenies of two crosses between a donor line (CMl 202) and two susceptible lines (CMl 321 and CMl 384) were developed. Conventional and molecular marker assisted selection (MAS) methods were used to screen for resistance to MSD in each of the four populations. To facilitate unbiased comparison, separate screening nurseries were established for MAS and conventional screening. The objectives of the study were five-fold; 1) to assess the status of MSD in Uganda and understand farmers' preferences and varietal selection criteria for maize using a participatory rural appraisal (PRA), 2) to screen for MSD resistance in early generations of segregating maize populations using conventional method, 3) to screen for resistance to MSD using SSR marker assisted selection , 4) to compare the effectiveness of marker assisted selection and conventional methods for selection for resistance to MSD, and 5) to compare costs associated with MAS and conventional selection methods. Results of PRA showed that unreliable rainfall and insect pests were the dominant constraints to maize productivity in Uganda. Diseases were ranked fifth among the production constraints . Maize streak virus disease was considered the most important disease constraint. Farmers showed common preference for high yielding and early maturing cultivars. However, farmers had other special preferences which were diverse and included large, white and high test density kernels for marketing, and sweet taste, particularly for home consumption. Farmers' research priorities included tolerance to drought, resistance to insect pests and diseases, sweetness, prolificacy, resistance to lodging, and drooping leaves because theyt cover the soil fast and prevent weed growth. Conventional screening for resistance to MSD showed that backcross and selfing populations segregated in 1:1 and 3:1 Mendelian ratios confirming the presence of one major gene with simple inheritance . Severity and incidence of disease were positively correlated suggesting a non-reference by the insects. In the selfing populations, the presence of complete esistance against MSD was suggested because frequency distribution patterns were highly skewed in favour of resistance. There was a decrease in disease severities with selection from BC1F1 to BC2F1 and from F2 to F3 generations indicating that high response to selection was achieved. On the other hand, one marker, umc1917, consistently polymorphic and eo-dominant was selected and used in MAS protocol. Results showed that the observed outcomes fitted the expected ratio of 1:2:1 for a F2 population and 1:1 for a BC1F1 population (X2 not significant). Evaluation of F3 and BC2F1 progeny selected using markers showed low disease severity suggesting that marker assisted selection was effective. However, the study showed that the presence of the O'Tl, was not consistent with symptom expression in the field. Evaluation of lines in three-way crosses identified ten potential lines that were high yielding, highly resistant to MSD and stable across three locations. Both MAS and conventional selection were equally effective in identifying high yielding lines although resistance was higher under MAS. Costs of MAS and conventional method varied depending on the units for comparison. The total costs of conventional method were higher than that of MAS in both first and second selection cycles. Comparing costs per row for conventional and costs per plant or data point for MAS showed that conventional selection was 2.4 times more expensive than costs per sample for MAS. However, costs per plant for MAS were 6.6 times higher than for conventional selection.
Consumer acceptability, adaptability and genetic analysis of orange pro-vitamin A maize hybrids in KwaZulu-Natal province of South Africa.
(2018) Qwabe, Fikile Nozipho Pricilla.; Derera, John.; Gasura, Edmore.; Kolanisi, Unathi.; Siwela, Muthulisi.; Palacios, Natalia.
Diets of most people in sub-Saharan Africa are composed of mainly cereals that frequently lack most nutrients, such as Vitamin A. Vitamin A deficiency is the leading cause of preventable childhood blindness and increases the risk of death from common childhood illnesses, such as diarrhea. According to The World Health Organization, it affects 48% of children less than 5 years, in sub-Saharan Africa. This global challenge could be alleviated by breeding orange pro-Vitamin A maize hybrids, among other strategies. However, there was need to determine acceptance, adaptation and adoptability of these hybrids by the poor communities, in KwaZulu-Natal, and potential for improvement through breeding. Bio-fortification of maize with orange pro-vitamin A (PVA) changes maize grain colour, organoleptic properties (mainly flavor) and various agronomic traits due to effects of different genetic backgrounds. This study aimed at (i) establishing perception of consumers towards fresh PVA maize, (ii) determining agronomic performance of PVA hybrids across major production environments in South Africa, (iii) determining combining ability and gene action among a set of PVA germplasm and, (iv) identifying traits associated with high yield in PVA germplasm. Sensory evaluation and focus group discussions were conducted, in KwaZulu-Natal province, of South Africa. Results indicated acceptance of orange PVA maize by the end-users and reflected the effects of both age and gender. There were more women (79%) and men (76%) preferring boiled and roasted green mealies, respectively. Interestingly, the youth (18-35 years) had a higher acceptance of PVA maize compared to middle aged (36-60 years) and the elderly (61-75 years). However, focus group discussions revealed that farmers had concerns of agronomic adaptability, economic value, and food value of the PVA maize. The study showed potential for PVA maize in its fresh form for utilization as a food and cash crop. To understand the genetics of PVA maize, crosses among 10 PVA inbred materials with 10 inbred materials from diverse genetic backgrounds were conducted using a lines by tester mating scheme. The resultant 100 single cross hybrids were evaluated using a 10 x 10 α-lattice design with two replications across four environments in South Africa. There were significant differences among hybrids for grain yield and agronomic traits. The lines and testers main effects, and line x tester interaction effects, as well as their interactions with the sites were significant (P< 0.05) for grain yield and associated traits. The predominant additive gene action for most traits including grain yield allowed selection of desirable inbred lines. The significant (P<0.05) genotype plus genotype x environment interaction enabled identification of stable and high yielding hybrids. The agronomic performance of a set of PVA hybrids were compared to white and yellow maize counterparts to understand the yield gap among them. Generally, PVA hybrids had yields that were lower than that of the white and yellow maize types, indicating opportunity for further breeding gains. Although several traits such as longer ears, high shelling percentage, and resistance to diseases were correlated with yield, the lower grain yield of PVA hybrids was associated with high root and stem lodging. There is need to take advantage of the predominant additive gene action to develop inbred lines that can produce stable and high yielding hybrids through fixing lodging related traits in PVA. Overall the study confirmed the opportunity for deploying orange pro-vitamin A maize hybrids and contribute to alleviation of Vitamin A deficiency in KwaZulu-Natal.